;;; ob-sh.el --- org-babel functions for shell evaluation ;; Copyright (C) 2009-2011 Free Software Foundation, Inc. ;; Author: Eric Schulte ;; Keywords: literate programming, reproducible research ;; Homepage: http://orgmode.org ;; Version: 7.4 ;; This file is part of GNU Emacs. ;; GNU Emacs is free software: you can redistribute it and/or modify ;; it under the terms of the GNU General Public License as published by ;; the Free Software Foundation, either version 3 of the License, or ;; (at your option) any later version. ;; GNU Emacs is distributed in the hope that it will be useful, ;; but WITHOUT ANY WARRANTY; without even the implied warranty of ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ;; GNU General Public License for more details. ;; You should have received a copy of the GNU General Public License ;; along with GNU Emacs. If not, see . ;;; Commentary: ;; Org-Babel support for evaluating shell source code. ;;; Code: (require 'ob) (require 'ob-comint) (require 'ob-eval) (require 'shell) (eval-when-compile (require 'cl)) (declare-function org-babel-comint-in-buffer "ob-comint" (buffer &rest body)) (declare-function org-babel-comint-wait-for-output "ob-comint" (buffer)) (declare-function org-babel-comint-buffer-livep "ob-comint" (buffer)) (declare-function org-babel-comint-with-output "ob-comint" (meta &rest body)) (declare-function orgtbl-to-generic "org-table" (table params)) (defvar org-babel-default-header-args:sh '()) (defvar org-babel-sh-command "sh" "Command used to invoke a shell. This will be passed to `shell-command-on-region'") (defun org-babel-execute:sh (body params) "Execute a block of Shell commands with Babel. This function is called by `org-babel-execute-src-block'." (let* ((session (org-babel-sh-initiate-session (cdr (assoc :session params)))) (result-params (cdr (assoc :result-params params))) (full-body (org-babel-expand-body:generic body params (org-babel-variable-assignments:sh params)))) (org-babel-reassemble-table (org-babel-sh-evaluate session full-body result-params) (org-babel-pick-name (cdr (assoc :colname-names params)) (cdr (assoc :colnames params))) (org-babel-pick-name (cdr (assoc :rowname-names params)) (cdr (assoc :rownames params)))))) (defun org-babel-prep-session:sh (session params) "Prepare SESSION according to the header arguments specified in PARAMS." (let* ((session (org-babel-sh-initiate-session session)) (var-lines (org-babel-variable-assignments:sh params))) (org-babel-comint-in-buffer session (mapc (lambda (var) (insert var) (comint-send-input nil t) (org-babel-comint-wait-for-output session)) var-lines)) session)) (defun org-babel-load-session:sh (session body params) "Load BODY into SESSION." (save-window-excursion (let ((buffer (org-babel-prep-session:sh session params))) (with-current-buffer buffer (goto-char (process-mark (get-buffer-process (current-buffer)))) (insert (org-babel-chomp body))) buffer))) ;; helper functions (defun org-babel-variable-assignments:sh (params) "Return list of shell statements assigning the block's variables" (let ((sep (cdr (assoc :separator params)))) (mapcar (lambda (pair) (format "%s=%s" (car pair) (org-babel-sh-var-to-sh (cdr pair) sep))) (mapcar #'cdr (org-babel-get-header params :var))))) (defun org-babel-sh-var-to-sh (var &optional sep) "Convert an elisp value to a shell variable. Convert an elisp var into a string of shell commands specifying a var of the same value." (if (listp var) (flet ((deep-string (el) (if (listp el) (mapcar #'deep-string el) (org-babel-sh-var-to-sh el sep)))) (format "$(cat <<'BABEL_TABLE'\n%s\nBABEL_TABLE\n)" (orgtbl-to-generic (deep-string (if (listp (car var)) var (list var))) (list :sep (or sep "\t"))))) (if (stringp var) (if (string-match "[\n\r]" var) (format "$(cat <